OMOPDataset

A dataset class for handling OMOP CDM (Common Data Model) data. Inherits from BaseDataset.

Super class

RHealth::BaseDataset -> OMOPDataset

Methods

Public methods

• OMOPDataset$new()

• OMOPDataset$clone()

Inherited methods

• RHealth::BaseDataset$collected_global_event_df()
• RHealth::BaseDataset$default_task()
• RHealth::BaseDataset$get_patient()
• RHealth::BaseDataset$iter_patients()
• RHealth::BaseDataset$load_data()
• RHealth::BaseDataset$load_table()
• RHealth::BaseDataset$set_task()
• RHealth::BaseDataset$stats()
• RHealth::BaseDataset$unique_patient_ids()

---

Method new()

Initialize the OMOPDataset.

Usage

OMOPDataset$new(
  root,
  tables = character(),
  dataset_name = NULL,
  config_path = NULL,
  dev = FALSE,
  ...
)

Arguments

root

Root directory of the dataset.

tables

Character vector of extra tables to include.

dataset_name

Optional dataset name.

config_path

Optional path to YAML config file.

dev

Logical flag for dev mode.

...

Additional arguments passed to BaseDataset$initialize.

---

Method clone()

The objects of this class are cloneable with this method.

Usage

OMOPDataset$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.